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BMCBI
2008
85views more  BMCBI 2008»
13 years 11 months ago
Predicted mouse peroxisome-targeted proteins and their actual subcellular locations
Background: The import of most intraperoxisomal proteins is mediated by peroxisome targeting signals at their C-termini (PTS1) or N-terminal regions (PTS2). Both signals have been...
Yumi Mizuno, Igor Kurochkin, Marlis Herberth, Yasu...
BMCBI
2008
71views more  BMCBI 2008»
13 years 11 months ago
An improved string composition method for sequence comparison
Background: Historically, two categories of computational algorithms (alignment-based and alignment-free) have been applied to sequence comparison
Guoqing Lu, Shunpu Zhang, Xiang Fang
BMCBI
2008
75views more  BMCBI 2008»
13 years 11 months ago
Discovering relationships among dispersed repeats using spatial association rule mining
Surya Saha, Susan Bridges, Zenaida Magbanua, Danie...
BMCBI
2008
132views more  BMCBI 2008»
13 years 11 months ago
Clustering ionic flow blockade toggles with a Mixture of HMMs
Background: Ionic current blockade signal processing, for use in nanopore detection, offers a promising new way to analyze single molecule properties with potential implications f...
Alexander G. Churbanov, Stephen Winters-Hilt
BMCBI
2008
104views more  BMCBI 2008»
13 years 11 months ago
InteroPORC: an automated tool to predict highly conserved protein interaction networks
teps. First, we abstracted protein interactions onto orthologous cluster links. For a given source interaction, if both proteins belonged to a cluster, we constructed a link betwee...
Magali Michaut, Samuel Kerrien, Luisa Montecchi-Pa...
BMCBI
2008
63views more  BMCBI 2008»
13 years 11 months ago
Recognizing speculative language in biomedical research articles: a linguistically motivated perspective
We explore a linguistically motivated approach to the problem of recognizing speculative language ("hedging") in biomedical research articles. We describe a method, whic...
Halil Kilicoglu, Sabine Bergler
BMCBI
2008
104views more  BMCBI 2008»
13 years 11 months ago
Analyzing the simplicial decomposition of spatial protein structures
Background: The fast growing Protein Data Bank contains the three-dimensional description of more than 45000 protein- and nucleic-acid structures today. The large majority of the ...
Rafael Ördög, Zoltan Szabadka, Vince Gro...
BMCBI
2008
141views more  BMCBI 2008»
13 years 11 months ago
MiRTif: a support vector machine-based microRNA target interaction filter
Background: MicroRNAs (miRNAs) are a set of small non-coding RNAs serving as important negative gene regulators. In animals, miRNAs turn down protein translation by binding to the...
Yuchen Yang, Yu-Ping Wang, Kuo-Bin Li
BMCBI
2008
158views more  BMCBI 2008»
13 years 11 months ago
Real value prediction of protein solvent accessibility using enhanced PSSM features
Background: Prediction of protein solvent accessibility, also called accessible surface area (ASA) prediction, is an important step for tertiary structure prediction directly from...
Darby Tien-Hao Chang, Hsuan-Yu Huang, Yu-Tang Syu,...
BMCBI
2008
102views more  BMCBI 2008»
13 years 11 months ago
Stability of the core domain of p53: insights from computer simulations
: The tumour suppressor protein p53 protein has a core domain that binds DNA and is the site for most oncogenic mutations. This domain is quite unstable compared to its homologs p...
Arumugam Madhumalar, Derek John Smith, Chandra Ver...