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BMCBI
2006
126views more  BMCBI 2006»
13 years 11 months ago
A joint model of regulatory and metabolic networks
Background: Gene regulation and metabolic reactions are two primary activities of life. Although many works have been dedicated to study each system, the coupling between them is ...
Chen-Hsiang Yeang, Martin Vingron
BMCBI
2006
122views more  BMCBI 2006»
13 years 11 months ago
BioMoby extensions to the Taverna workflow management and enactment software
Background: As biology becomes an increasingly computational science, it is critical that we develop software tools that support not only bioinformaticians, but also bench biologi...
Edward A. Kawas, Martin Senger, Mark D. Wilkinson
BMCBI
2006
114views more  BMCBI 2006»
13 years 11 months ago
A methodology for global validation of microarray experiments
Background: DNA microarrays are popular tools for measuring gene expression of biological samples. This ever increasing popularity is ensuring that a large number of microarray st...
Mathieu Miron, Owen Z. Woody, Alexandre Marcil, Ca...
BMCBI
2006
92views more  BMCBI 2006»
13 years 11 months ago
Systematic assignment of thermodynamic constraints in metabolic network models
Background: The availability of genome sequences for many organisms enabled the reconstruction of several genome-scale metabolic network models. Currently, significant efforts are...
Anne Kümmel, Sven Panke, Matthias Heinemann
BMCBI
2006
169views more  BMCBI 2006»
13 years 11 months ago
Beyond microarrays: Finding key transcription factors controlling signal transduction pathways
Background: Massive gene expression changes in different cellular states measured by microarrays, in fact, reflect just an "echo" of real molecular processes in the cell...
Alexander E. Kel, Nico Voss, Ruy Jauregui, Olga V....
BMCBI
2006
117views more  BMCBI 2006»
13 years 11 months ago
The Cluster Variation Method for Efficient Linkage Analysis on Extended Pedigrees
Background: Computing exact multipoint LOD scores for extended pedigrees rapidly becomes infeasible as the number of markers and untyped individuals increase. When markers are exc...
Cornelis A. Albers, Martijn A. R. Leisink, Hilbert...
BMCBI
2006
74views more  BMCBI 2006»
13 years 11 months ago
Establishing bioinformatics research in the Asia Pacific
Shoba Ranganathan, Martti Tammi, Michael Gribskov,...
BMCBI
2006
95views more  BMCBI 2006»
13 years 11 months ago
Discrete profile comparison using information bottleneck
Sequence homologs are an important source of information about proteins. Amino acid profiles, representing the position-specific mutation probabilities found in profiles, are a ri...
Sean O'Rourke, Gal Chechik, Robin Friedman, Eleaza...
BMCBI
2006
87views more  BMCBI 2006»
13 years 11 months ago
Trends in life science grid: from computing grid to knowledge grid
Background: Grid computing has great potential to become a standard cyberinfrastructure for life sciences which often require high-performance computing and large data handling wh...
Akihiko Konagaya
BMCBI
2006
106views more  BMCBI 2006»
13 years 11 months ago
Improving the performance of DomainDiscovery of protein domain boundary assignment using inter-domain linker index
Background: Knowledge of protein domain boundaries is critical for the characterisation and understanding of protein function. The ability to identify domains without the knowledg...
Abdur R. Sikder, Albert Y. Zomaya